mass repo cleanup + lots of documentation #313
Open
rmobmina wants to merge 9 commits intoBioAnalyticResource:devfrom
Open
mass repo cleanup + lots of documentation #313rmobmina wants to merge 9 commits intoBioAnalyticResource:devfrom
rmobmina wants to merge 9 commits intoBioAnalyticResource:devfrom
Conversation
Contributor
rmobmina
commented
Apr 13, 2026
rmobmina
commented
- Standardized docstrings and added attribution headers across all EFP files
- Added comprehensive inline comments and notes throughout the codebase
- Removed stale archive/sample data files and cleaned up repo structure
- Fixed failing tests across EFP data, schemas, and resource endpoints
- fix agi_to_probset typo (was agi_to_probst) in gene_id_utils.py - add data_type field to microarray /samples endpoint response - switch endpoint to efp_species_view_info_typed.json - add typed eFP view info JSON and data type annotation script - ignore large SQL dump files from git tracking
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.